skrt

• skrt package
  • Subpackages
    • skrt.better_viewer package
      • Submodules
      • Module contents
    • skrt.viewer package
      • Submodules
      • Module contents
  • Submodules
    • skrt.application module
      • Algorithm
      • Application
      • Status
      • get_paths()
    • skrt.core module
      • Archive
      • Data
      • Dated
      • Defaults
      • DicomFile
      • File
      • PathData
      • TicToc
      • alphanumeric()
      • compress_user()
      • download()
      • filter_on_paths()
      • filtered_dict()
      • fullpath()
      • generate_timestamp()
      • get_associated_image()
      • get_basenames()
      • get_data_by_filename()
      • get_data_indices()
      • get_day_in_week()
      • get_dict_permutations()
      • get_file_size()
      • get_float()
      • get_hour_in_day()
      • get_hour_in_week()
      • get_indexed_objs()
      • get_interval_in_days()
      • get_interval_in_whole_days()
      • get_logger()
      • get_n_file()
      • get_n_file_below()
      • get_qualified_class_name()
      • get_referenced_image()
      • get_referenced_object()
      • get_single_path()
      • get_stat()
      • get_stat_functions()
      • get_subdir_paths()
      • get_time_and_date()
      • get_time_separated_objects()
      • get_uid_without_slice()
      • get_value_from_json()
      • hu_to_mu()
      • is_list()
      • is_timestamp()
      • load_json()
      • load_toml()
      • make_dir()
      • matches_suffix()
      • mu_to_hu()
      • prepend_path()
      • print_paths()
      • qualified__name()
      • qualified_name()
      • relative_path()
      • set_matlab_runtime()
      • tic()
      • to_list()
      • toc()
      • year_fraction()
    • skrt.dicom_writer module
      • DicomWriter
    • skrt.dose module
      • Constraint
      • Dose
      • ImageOverlay
      • Plan
      • remove_duplicate_doses()
      • sum_doses()
    • skrt.image module
      • Image
      • ImageComparison
      • Sinogram
      • checked_crop_limits()
      • crop_by_amounts()
      • default_aspect()
      • downsample()
      • entropy()
      • get_alignment_strategy()
      • get_alignment_translation()
      • get_box_mask_from_mask()
      • get_dicom_affine()
      • get_dicom_orientation()
      • get_dicom_paths()
      • get_dicom_voxel_size()
      • get_dicom_window()
      • get_geometry()
      • get_image_comparison_metrics()
      • get_mask()
      • get_mask_bbox()
      • get_mi_metrics()
      • get_quality_metrics()
      • get_translation_to_align()
      • get_translation_to_align_image_rois()
      • kv_to_mv()
      • load_dicom()
      • load_dicom_many_files()
      • load_dicom_single_file()
      • load_nifti()
      • load_npy()
      • load_rgb()
      • match_image_voxel_sizes()
      • match_images()
      • match_images_for_comparison()
      • null_margins()
      • pad_transpose()
      • remove_duplicate_images()
      • rescale_dicom_data()
      • rescale_images()
      • set_ax()
      • set_image_orientation_patient()
      • sum_images()
      • to_inches()
      • write_nifti()
      • write_npy()
    • skrt.multi module
      • PatientDataset
      • PatientIterator
    • skrt.patient module
      • Patient
      • Study
      • find_matching_object()
    • skrt.registration module
      • DeformationField
      • Elastix
      • Grid
      • Jacobian
      • Matlab
      • NiftyReg
      • Registration
      • RegistrationEngine
      • add_engine()
      • adjust_parameters()
      • get_data_dir()
      • get_default_pfiles()
      • get_default_pfiles_dir()
      • get_engine_cls()
      • get_engine_name()
      • get_engines()
      • get_image_transform_parameters()
      • get_jacobian_colormap()
      • get_parameters()
      • read_parameters()
      • set_elastix_dir()
      • set_engine_dir()
      • shift_translation_parameters()
      • write_parameters()
    • skrt.segmentation module
      • MultiAtlasSegmentation
      • SasTuner
      • SingleAtlasSegmentation
      • ensure_dict()
      • ensure_image()
      • ensure_structure_set()
      • get_atlases()
      • get_contour_propagation_strategies()
      • get_fixed_and_moving()
      • get_option()
      • get_options()
      • get_segmentation_steps()
      • get_segmentation_strategies()
      • get_steps()
      • get_strategy()
      • get_structure_set_index()
      • load_mas()
      • load_sas()
      • select_atlases()
    • skrt.simulation module
      • Cuboid
      • Cylinder
      • Grid
      • ShapeGroup
      • Sphere
      • SyntheticImage
      • get_value()
      • get_values()
      • make_grid()
      • make_head()
    • skrt.structures module
      • ROI
      • ROIDefaults
      • StructureSet
      • StructureSetIterator
      • best_text_color()
      • compare_roi_pairs()
      • contour_to_polygon()
      • create_dummy_image()
      • create_majority_vote()
      • create_roi_overlap()
      • create_roi_sum()
      • create_staple()
      • create_structure_sets_from_nifti()
      • df_to_html()
      • expand_slice_stats()
      • get_all_rois()
      • get_by_slice_methods()
      • get_colored_roi_string()
      • get_comparison_metrics()
      • get_conformity_index()
      • get_consensus_types()
      • get_dicom_sequence()
      • get_intersection()
      • get_metric_method()
      • get_roi_slice()
      • get_slice_positions()
      • get_structuring_element()
      • get_translation_to_align()
      • interpolate_points_single_contour()
      • load_rois_dicom()
      • match_rois()
      • polygon_to_contour()
  • Module contents