skrt.viewer package

Submodules

• skrt.viewer.core module
  • DeformationImage
    • DeformationImage.__init__()
    • DeformationImage.get_deformation_slice()
    • DeformationImage.plot()
    • DeformationImage.plot_grid()
    • DeformationImage.plot_quiver()
    • DeformationImage.set_plotting_defaults()
    • DeformationImage.set_slice()
    • DeformationImage.set_spacing()
  • Image
    • Image.__init__()
    • Image.adjust_ax()
    • Image.convert_to_3d()
    • Image.downsample()
    • Image.downsample_array()
    • Image.get_ax_dict()
    • Image.get_coords()
    • Image.get_data()
    • Image.get_idx()
    • Image.get_image_centre()
    • Image.get_kwargs()
    • Image.get_lengths()
    • Image.get_min()
    • Image.get_min_hu()
    • Image.get_relative_width()
    • Image.get_slice()
    • Image.get_zoomed_lims()
    • Image.idx_to_pos()
    • Image.idx_to_slice()
    • Image.label_ax()
    • Image.length_to_voxels()
    • Image.match_size()
    • Image.plot()
    • Image.pos_to_idx()
    • Image.pos_to_slice()
    • Image.process_mask()
    • Image.resample()
    • Image.reset()
    • Image.rotate()
    • Image.same_frame()
    • Image.set_ax()
    • Image.set_geom()
    • Image.set_mask()
    • Image.set_plotting_defaults()
    • Image.set_shift()
    • Image.set_slice()
    • Image.slice_to_idx()
    • Image.slice_to_pos()
    • Image.translate()
  • ImageComparison
    • ImageComparison.__init__()
    • ImageComparison.get_dta()
    • ImageComparison.get_gamma()
    • ImageComparison.get_relative_width()
    • ImageComparison.plot()
    • ImageComparison.plot_chequerboard()
    • ImageComparison.plot_difference()
    • ImageComparison.plot_dta()
    • ImageComparison.plot_gamma()
    • ImageComparison.plot_overlay()
  • MultiImage
    • MultiImage.__init__()
    • MultiImage.get_date_dict()
    • MultiImage.get_n_colorbars()
    • MultiImage.get_relative_width()
    • MultiImage.load_df()
    • MultiImage.load_structs()
    • MultiImage.load_to()
    • MultiImage.plot()
    • MultiImage.set_date()
    • MultiImage.set_masks()
    • MultiImage.set_plotting_defaults()
  • OrthogonalImage
    • OrthogonalImage.__init__()
    • OrthogonalImage.get_relative_width()
    • OrthogonalImage.plot()
    • OrthogonalImage.set_axes()
  • Struct
    • Struct.__init__()
    • Struct.assign_color()
    • Struct.centroid()
    • Struct.convert_xy_contours()
    • Struct.get_area()
    • Struct.get_centre()
    • Struct.get_contour_slice()
    • Struct.get_length()
    • Struct.get_struct_centre()
    • Struct.get_volume()
    • Struct.load()
    • Struct.mid_slice()
    • Struct.on_slice()
    • Struct.plot()
    • Struct.plot_contour()
    • Struct.plot_mask()
    • Struct.set_contours()
    • Struct.set_label()
    • Struct.set_mask()
    • Struct.set_plotting_defaults()
    • Struct.slices()
    • Struct.struct_extent()
  • StructComparison
    • StructComparison.__init__()
    • StructComparison.abs_centroid_distance()
    • StructComparison.area_ratio()
    • StructComparison.centroid_distance()
    • StructComparison.dice()
    • StructComparison.extent_ratio()
    • StructComparison.hausdorff_distance()
    • StructComparison.is_valid()
    • StructComparison.mean_surface_distance()
    • StructComparison.on_slice()
    • StructComparison.plot()
    • StructComparison.plot_mask()
    • StructComparison.relative_area()
    • StructComparison.relative_vol()
    • StructComparison.rms_surface_distance()
    • StructComparison.surface_distances()
    • StructComparison.update_s2_data()
    • StructComparison.vol_ratio()
  • StructureSet
    • StructureSet.__init__()
    • StructureSet.add_struct_array()
    • StructureSet.add_struct_file()
    • StructureSet.find_color_match()
    • StructureSet.find_comparisons()
    • StructureSet.find_name_match()
    • StructureSet.get_comparison_dict()
    • StructureSet.get_comparisons()
    • StructureSet.get_standalone_structs()
    • StructureSet.get_struct()
    • StructureSet.get_struct_dict()
    • StructureSet.get_structs()
    • StructureSet.keep_struct()
    • StructureSet.load_all()
    • StructureSet.load_settings()
    • StructureSet.load_struct_pairs()
    • StructureSet.load_structs()
    • StructureSet.load_structs_from_dicom()
    • StructureSet.load_structs_from_file()
    • StructureSet.reassign_colors()
    • StructureSet.set_unique_name()
  • contours_to_indices()
  • contours_to_mask()
  • find_date()
  • find_files()
  • get_dicom_sequence()
  • get_rotation_matrix()
  • get_translation_matrix()
  • get_unique_path()
  • is_list()
  • is_nested()
  • load_dicom()
  • load_dicom_multiple_files()
  • load_dicom_single_file()
  • load_image()
  • load_structs()
  • make_name_nice()
  • make_three()
  • standard_str()
  • to_inches()
• skrt.viewer.viewer module
  • OrthogViewer
    • OrthogViewer.jump_to_struct()
    • OrthogViewer.make_image()
  • QuickViewer
    • QuickViewer.__init__()
    • QuickViewer.any_attr()
    • QuickViewer.apply_translation()
    • QuickViewer.find_translation_file()
    • QuickViewer.get_input_list()
    • QuickViewer.load_comparison()
    • QuickViewer.make_comparison_ui()
    • QuickViewer.make_fig()
    • QuickViewer.make_lower_ui()
    • QuickViewer.make_reset_zoom()
    • QuickViewer.make_translation_ui()
    • QuickViewer.make_ui()
    • QuickViewer.match_axes()
    • QuickViewer.on_key()
    • QuickViewer.on_scroll()
    • QuickViewer.plot()
    • QuickViewer.set_callbacks()
    • QuickViewer.set_slider_widths()
    • QuickViewer.show()
    • QuickViewer.write_translation_to_file()
  • SingleViewer
    • SingleViewer.__init__()
    • SingleViewer.centre_at_struct()
    • SingleViewer.decrease_slice()
    • SingleViewer.get_hu_range()
    • SingleViewer.get_struct_html()
    • SingleViewer.get_struct_visibility()
    • SingleViewer.increase_slice()
    • SingleViewer.jump_to_struct()
    • SingleViewer.make_image()
    • SingleViewer.make_lower_ui()
    • SingleViewer.make_ui()
    • SingleViewer.on_key()
    • SingleViewer.on_scroll()
    • SingleViewer.on_view_change()
    • SingleViewer.plot()
    • SingleViewer.plot_image()
    • SingleViewer.reset_zoom()
    • SingleViewer.save_fig()
    • SingleViewer.save_struct_comp_table()
    • SingleViewer.save_struct_info_table()
    • SingleViewer.save_table()
    • SingleViewer.set_ax_lims()
    • SingleViewer.set_callbacks()
    • SingleViewer.set_slice()
    • SingleViewer.set_slice_and_view()
    • SingleViewer.set_slice_from_pos()
    • SingleViewer.show()
    • SingleViewer.show_in_notebook()
    • SingleViewer.slice_to_slider()
    • SingleViewer.slider_to_sl()
    • SingleViewer.update_slice_slider()
    • SingleViewer.update_slice_slider_desc()
    • SingleViewer.update_slider()
    • SingleViewer.update_struct_comparisons()
    • SingleViewer.update_struct_info()
    • SingleViewer.update_struct_sliders()
    • SingleViewer.update_zoom_sliders()
  • in_notebook()
  • write_translation_to_file()

Module contents